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iupac.xml

src/py/data/iupac.xml

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<!--

Authors: Michael Habeck
         Wolfgang Rieping
         Institut Pasteur, Paris
        
         Copyright (C) 2003 Michael Habeck and Wolfgang Rieping
         No warranty implied or expressed.
         All rights reserved.

$Author: rieping $
$Revision: 1.2 $
$Date: 2003/03/06 14:08:33 $

-->

<!DOCTYPE topology SYSTEM "topology1.0.dtd">
<topology description="Amino acid definitions following the IUPAC convention" name="IUPAC">
  <residue residue_type="AMINO_ACID" name="CYS">
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="CB" atom_type="C" hetero="None"/>
    <atom name="HA" atom_type="H" hetero="CA"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="N" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="SG" atom_type="S" hetero="None"/>
    <atom name="HG" atom_type="H" hetero="None"/>
    <atom name="HB3" atom_type="H" hetero="CB"/>
    <atom name="HB2" atom_type="H" hetero="CB"/>
    <backbone>
      <atom_name name="N"/>
      <atom_name name="CA"/>
      <atom_name name="HA"/>
      <atom_name name="C"/>
    </backbone>
    <sidechain>
      <atom_name name="CB"/>
      <atom_name name="HB2"/>
      <atom_name name="HB3"/>
      <atom_name name="SG"/>
      <atom_name name="HG"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HB2"/>
      <atom_name name="HB3"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>
  <residue residue_type="AMINO_ACID" name="ASP">
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="CB" atom_type="C" hetero="None"/>
    <atom name="HA" atom_type="H" hetero="CA"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="H" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="OD1" atom_type="O" hetero="None"/>
    <atom name="CG" atom_type="C" hetero="None"/>
    <atom name="HB3" atom_type="H" hetero="CB"/>
    <atom name="HB2" atom_type="H" hetero="CB"/>
    <atom name="OD2" atom_type="O" hetero="None"/>
    <backbone>
      <atom_name name="N"/>
      <atom_name name="CA"/>
      <atom_name name="HA"/>
      <atom_name name="C"/>
    </backbone>
    <sidechain>
      <atom_name name="CB"/>
      <atom_name name="HB2"/>
      <atom_name name="HB3"/>
      <atom_name name="OD1"/>
      <atom_name name="OD2"/>
      <atom_name name="CG"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HB2"/>
      <atom_name name="HB3"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>
  <residue residue_type="AMINO_ACID" name="SER">
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="CB" atom_type="C" hetero="None"/>
    <atom name="HA" atom_type="H" hetero="CA"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="H" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="OG" atom_type="O" hetero="None"/>
    <atom name="HG" atom_type="H" hetero="None"/>
    <atom name="HB3" atom_type="H" hetero="CB"/>
    <atom name="HB2" atom_type="H" hetero="CB"/>
    <backbone>
      <atom_name name="N"/>
      <atom_name name="CA"/>
      <atom_name name="HA"/>
      <atom_name name="C"/>
    </backbone>
    <sidechain>
      <atom_name name="CB"/>
      <atom_name name="OG"/>
      <atom_name name="HG"/>
      <atom_name name="HB3"/>
      <atom_name name="HB2"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HB2"/>
      <atom_name name="HB3"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>
  <residue residue_type="AMINO_ACID" name="GLN">
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="CB" atom_type="C" hetero="None"/>
    <atom name="HA" atom_type="H" hetero="CA"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="H" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="HG2" atom_type="H" hetero="CG"/>
    <atom name="CG" atom_type="C" hetero="None"/>
    <atom name="HG3" atom_type="H" hetero="CG"/>
    <atom name="CD" atom_type="C" hetero="None"/>
    <atom name="HE22" atom_type="H" hetero="NE2"/>
    <atom name="HE21" atom_type="H" hetero="NE2"/>
    <atom name="NE2" atom_type="N" hetero="None"/>
    <atom name="OE1" atom_type="O" hetero="None"/>
    <atom name="HB3" atom_type="H" hetero="CB"/>
    <atom name="HB2" atom_type="H" hetero="CB"/>
    <backbone>
      <atom_name name="N"/>
      <atom_name name="CA"/>
      <atom_name name="HA"/>
      <atom_name name="C"/>
    </backbone>
    <sidechain>
      <atom_name name="CB"/>
      <atom_name name="HG2"/>
      <atom_name name="CG"/>
      <atom_name name="HG3"/>
      <atom_name name="CD"/>
      <atom_name name="HE22"/>
      <atom_name name="HE21"/>
      <atom_name name="NE2"/>
      <atom_name name="OE1"/>
      <atom_name name="HB3"/>
      <atom_name name="HB2"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HB2"/>
      <atom_name name="HB3"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HG2"/>
      <atom_name name="HG3"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HE21"/>
      <atom_name name="HE22"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>
  <residue residue_type="AMINO_ACID" name="LYS">
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="CB" atom_type="C" hetero="None"/>
    <atom name="HA" atom_type="H" hetero="CA"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="H" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="CG" atom_type="C" hetero="None"/>
    <atom name="CE" atom_type="C" hetero="None"/>
    <atom name="CD" atom_type="C" hetero="None"/>
    <atom name="HD3" atom_type="H" hetero="CD"/>
    <atom name="HD2" atom_type="H" hetero="CD"/>
    <atom name="HE2" atom_type="H" hetero="CE"/>
    <atom name="HE3" atom_type="H" hetero="CE"/>
    <atom name="HG2" atom_type="H" hetero="CG"/>
    <atom name="HG3" atom_type="H" hetero="CG"/>
    <atom name="NZ" atom_type="N" hetero="None"/>
    <atom name="HZ1" atom_type="H" hetero="NZ"/>
    <atom name="HB3" atom_type="H" hetero="CB"/>
    <atom name="HZ3" atom_type="H" hetero="NZ"/>
    <atom name="HZ2" atom_type="H" hetero="NZ"/>
    <atom name="HB2" atom_type="H" hetero="CB"/>
    <backbone>
      <atom_name name="N"/>
      <atom_name name="CA"/>
      <atom_name name="HA"/>
      <atom_name name="C"/>
    </backbone>
    <sidechain>
      <atom_name name="CB"/>
      <atom_name name="CG"/>
      <atom_name name="CE"/>
      <atom_name name="CD"/>
      <atom_name name="HD3"/>
      <atom_name name="HD2"/>
      <atom_name name="HE2"/>
      <atom_name name="HE3"/>
      <atom_name name="HG2"/>
      <atom_name name="HG3"/>
      <atom_name name="NZ"/>
      <atom_name name="HZ1"/>
      <atom_name name="HB3"/>
      <atom_name name="HZ3"/>
      <atom_name name="HZ2"/>
      <atom_name name="HB2"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="METHYL">
      <atom_name name="HZ1"/>
      <atom_name name="HZ2"/>
      <atom_name name="HZ3"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HB2"/>
      <atom_name name="HB3"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HG2"/>
      <atom_name name="HG3"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HD2"/>
      <atom_name name="HD3"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HE2"/>
      <atom_name name="HE3"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>
  <residue residue_type="AMINO_ACID" name="THR">
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="CB" atom_type="C" hetero="None"/>
    <atom name="HA" atom_type="H" hetero="CA"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="H" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="CG2" atom_type="C" hetero="None"/>
    <atom name="HG22" atom_type="H" hetero="CG2"/>
    <atom name="OG1" atom_type="O" hetero="None"/>
    <atom name="HG1" atom_type="H" hetero="None"/>
    <atom name="HB" atom_type="H" hetero="CB"/>
    <atom name="HG21" atom_type="H" hetero="CG2"/>
    <atom name="HG23" atom_type="H" hetero="CG2"/>
    <backbone>
      <atom_name name="N"/>
      <atom_name name="CA"/>
      <atom_name name="HA"/>
      <atom_name name="C"/>
    </backbone>
    <sidechain>
      <atom_name name="CB"/>
      <atom_name name="CG2"/>
      <atom_name name="HG22"/>
      <atom_name name="OG1"/>
      <atom_name name="HG1"/>
      <atom_name name="HB"/>
      <atom_name name="HG21"/>
      <atom_name name="HG23"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="METHYL">
      <atom_name name="HG21"/>
      <atom_name name="HG22"/>
      <atom_name name="HG23"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>
  <residue residue_type="AMINO_ACID" name="PRO">
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="CB" atom_type="C" hetero="None"/>
    <atom name="HA" atom_type="H" hetero="CA"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="H" hetero="NT"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="HD3" atom_type="H" hetero="CD"/>
    <atom name="HD2" atom_type="H" hetero="CD"/>
    <atom name="HG2" atom_type="H" hetero="CG"/>
    <atom name="HG3" atom_type="H" hetero="CG"/>
    <atom name="CD" atom_type="C" hetero="None"/>
    <atom name="CG" atom_type="C" hetero="None"/>
    <atom name="HB3" atom_type="H" hetero="CB"/>
    <atom name="HB2" atom_type="H" hetero="CB"/>
    <backbone>
      <atom_name name="N"/>
      <atom_name name="CA"/>
      <atom_name name="HA"/>
      <atom_name name="C"/>
    </backbone>
    <sidechain>
      <atom_name name="CB"/>
      <atom_name name="HD3"/>
      <atom_name name="HD2"/>
      <atom_name name="HG2"/>
      <atom_name name="HG3"/>
      <atom_name name="CD"/>
      <atom_name name="CG"/>
      <atom_name name="HB3"/>
      <atom_name name="HB2"/>
    </sidechain>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HB2"/>
      <atom_name name="HB3"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HG2"/>
      <atom_name name="HG3"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HD2"/>
      <atom_name name="HD3"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>
  <residue residue_type="AMINO_ACID" name="HIS">
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="CB" atom_type="C" hetero="None"/>
    <atom name="HA" atom_type="H" hetero="CA"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="H" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="HE2" atom_type="H" hetero="NE2"/>
    <atom name="CE1" atom_type="C" hetero="None"/>
    <atom name="HD1" atom_type="H" hetero="ND1"/>
    <atom name="CG" atom_type="C" hetero="None"/>
    <atom name="HE1" atom_type="H" hetero="CE1"/>
    <atom name="HD2" atom_type="H" hetero="CD2"/>
    <atom name="CD2" atom_type="C" hetero="None"/>
    <atom name="ND1" atom_type="N" hetero="None"/>
    <atom name="NE2" atom_type="N" hetero="None"/>
    <atom name="HB3" atom_type="H" hetero="CB"/>
    <atom name="HB2" atom_type="H" hetero="CB"/>
    <backbone>
      <atom_name name="N"/>
      <atom_name name="CA"/>
      <atom_name name="HA"/>
      <atom_name name="C"/>
    </backbone>
    <sidechain>
      <atom_name name="CB"/>
      <atom_name name="HE2"/>
      <atom_name name="CE1"/>
      <atom_name name="HD1"/>
      <atom_name name="CG"/>
      <atom_name name="HE1"/>
      <atom_name name="HD2"/>
      <atom_name name="CD2"/>
      <atom_name name="ND1"/>
      <atom_name name="NE2"/>
      <atom_name name="HB3"/>
      <atom_name name="HB2"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HB2"/>
      <atom_name name="HB3"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>
  <residue residue_type="AMINO_ACID" name="PHE">
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="CB" atom_type="C" hetero="None"/>
    <atom name="HA" atom_type="H" hetero="CA"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="H" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="HZ" atom_type="H" hetero="CZ"/>
    <atom name="HE2" atom_type="H" hetero="CE2"/>
    <atom name="CE1" atom_type="C" hetero="None"/>
    <atom name="HD1" atom_type="H" hetero="CD1"/>
    <atom name="HB2" atom_type="H" hetero="CB"/>
    <atom name="CG" atom_type="C" hetero="None"/>
    <atom name="HE1" atom_type="H" hetero="CE1"/>
    <atom name="CZ" atom_type="C" hetero="None"/>
    <atom name="HD2" atom_type="H" hetero="CD2"/>
    <atom name="CE2" atom_type="C" hetero="None"/>
    <atom name="CD2" atom_type="C" hetero="None"/>
    <atom name="HB3" atom_type="H" hetero="CB"/>
    <atom name="CD1" atom_type="C" hetero="None"/>
    <backbone>
      <atom_name name="N"/>
      <atom_name name="CA"/>
      <atom_name name="HA"/>
      <atom_name name="C"/>
    </backbone>
    <sidechain>
      <atom_name name="CB"/>
      <atom_name name="HZ"/>
      <atom_name name="HE2"/>
      <atom_name name="CE1"/>
      <atom_name name="HD1"/>
      <atom_name name="HB2"/>
      <atom_name name="CG"/>
      <atom_name name="HE1"/>
      <atom_name name="CZ"/>
      <atom_name name="HD2"/>
      <atom_name name="CE2"/>
      <atom_name name="CD2"/>
      <atom_name name="HB3"/>
      <atom_name name="CD1"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="AROMATIC">
      <atom_name name="HD1"/>
      <atom_name name="HD2"/>
    </equivalent_group>
    <equivalent_group group_type="AROMATIC">
      <atom_name name="HE1"/>
      <atom_name name="HE2"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HB2"/>
      <atom_name name="HB3"/>
    </equivalent_group>
    <equivalent_group group_type="AROMATIC">
      <atom_name name="HD1"/>
      <atom_name name="HD2"/>
      <atom_name name="HE1"/>
      <atom_name name="HE2"/>
      <atom_name name="HZ"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>
  <residue residue_type="AMINO_ACID" name="ASN">
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="CB" atom_type="C" hetero="None"/>
    <atom name="HA" atom_type="H" hetero="CA"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="H" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="ND2" atom_type="N" hetero="None"/>
    <atom name="HD22" atom_type="H" hetero="ND2"/>
    <atom name="HD21" atom_type="H" hetero="ND2"/>
    <atom name="CG" atom_type="C" hetero="None"/>
    <atom name="OD1" atom_type="O" hetero="None"/>
    <atom name="HB3" atom_type="H" hetero="CB"/>
    <atom name="HB2" atom_type="H" hetero="CB"/>
    <backbone>
      <atom_name name="N"/>
      <atom_name name="CA"/>
      <atom_name name="HA"/>
      <atom_name name="C"/>
    </backbone>
    <sidechain>
      <atom_name name="CB"/>
      <atom_name name="ND2"/>
      <atom_name name="HD22"/>
      <atom_name name="HD21"/>
      <atom_name name="CG"/>
      <atom_name name="OD1"/>
      <atom_name name="HB3"/>
      <atom_name name="HB2"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HB2"/>
      <atom_name name="HB3"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HD21"/>
      <atom_name name="HD22"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>
  <residue residue_type="AMINO_ACID" name="GLY">
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="H" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="HA2" atom_type="H" hetero="CA"/>
    <atom name="HA3" atom_type="H" hetero="CA"/>
    <backbone>
      <atom_name name="C"/>
      <atom_name name="N"/>
      <atom_name name="CA"/>
    </backbone>
    <sidechain>
      <atom_name name="HA3"/>
      <atom_name name="HA2"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HA2"/>
      <atom_name name="HA3"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>
  <residue residue_type="AMINO_ACID" name="ILE">
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="CB" atom_type="C" hetero="None"/>
    <atom name="HA" atom_type="H" hetero="CA"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="H" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="CG2" atom_type="C" hetero="None"/>
    <atom name="HG22" atom_type="H" hetero="CG2"/>
    <atom name="HG21" atom_type="H" hetero="CG2"/>
    <atom name="CG1" atom_type="C" hetero="None"/>
    <atom name="HG12" atom_type="H" hetero="CG1"/>
    <atom name="HG13" atom_type="H" hetero="CG1"/>
    <atom name="HD13" atom_type="H" hetero="CD1"/>
    <atom name="CD1" atom_type="C" hetero="None"/>
    <atom name="HB" atom_type="H" hetero="CB"/>
    <atom name="HD12" atom_type="H" hetero="CD1"/>
    <atom name="HD11" atom_type="H" hetero="CD1"/>
    <atom name="HG23" atom_type="H" hetero="CG2"/>
    <backbone>
      <atom_name name="N"/>
      <atom_name name="CA"/>
      <atom_name name="HA"/>
      <atom_name name="C"/>
    </backbone>
    <sidechain>
      <atom_name name="CB"/>
      <atom_name name="CG2"/>
      <atom_name name="HG22"/>
      <atom_name name="HG21"/>
      <atom_name name="CG1"/>
      <atom_name name="HG12"/>
      <atom_name name="HG13"/>
      <atom_name name="HD13"/>
      <atom_name name="CD1"/>
      <atom_name name="HB"/>
      <atom_name name="HD12"/>
      <atom_name name="HD11"/>
      <atom_name name="HG23"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="METHYL">
      <atom_name name="HG21"/>
      <atom_name name="HG22"/>
      <atom_name name="HG23"/>
    </equivalent_group>
    <equivalent_group group_type="METHYL">
      <atom_name name="HD11"/>
      <atom_name name="HD12"/>
      <atom_name name="HD13"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HG12"/>
      <atom_name name="HG13"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>
  <residue residue_type="AMINO_ACID" name="LEU">
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="CB" atom_type="C" hetero="None"/>
    <atom name="HA" atom_type="H" hetero="CA"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="H" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="HD22" atom_type="H" hetero="CD2"/>
    <atom name="HD23" atom_type="H" hetero="CD2"/>
    <atom name="HD21" atom_type="H" hetero="CD2"/>
    <atom name="CG" atom_type="C" hetero="None"/>
    <atom name="CD1" atom_type="C" hetero="None"/>
    <atom name="CD2" atom_type="C" hetero="None"/>
    <atom name="HD13" atom_type="H" hetero="CD1"/>
    <atom name="HD12" atom_type="H" hetero="CD1"/>
    <atom name="HD11" atom_type="H" hetero="CD1"/>
    <atom name="HG" atom_type="H" hetero="CG"/>
    <atom name="HB3" atom_type="H" hetero="CB"/>
    <atom name="HB2" atom_type="H" hetero="CB"/>
    <backbone>
      <atom_name name="N"/>
      <atom_name name="CA"/>
      <atom_name name="HA"/>
      <atom_name name="C"/>
    </backbone>
    <sidechain>
      <atom_name name="CB"/>
      <atom_name name="HD22"/>
      <atom_name name="HD23"/>
      <atom_name name="HD21"/>
      <atom_name name="CG"/>
      <atom_name name="CD1"/>
      <atom_name name="CD2"/>
      <atom_name name="HD13"/>
      <atom_name name="HD12"/>
      <atom_name name="HD11"/>
      <atom_name name="HG"/>
      <atom_name name="HB3"/>
      <atom_name name="HB2"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="ISOPROPYL">
      <atom_name name="HD11"/>
      <atom_name name="HD12"/>
      <atom_name name="HD13"/>
      <atom_name name="HD21"/>
      <atom_name name="HD22"/>
      <atom_name name="HD23"/>
    </equivalent_group>
    <equivalent_group group_type="METHYL">
      <atom_name name="HD21"/>
      <atom_name name="HD22"/>
      <atom_name name="HD23"/>
    </equivalent_group>
    <equivalent_group group_type="METHYL">
      <atom_name name="HD11"/>
      <atom_name name="HD12"/>
      <atom_name name="HD13"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HB2"/>
      <atom_name name="HB3"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>
  <residue residue_type="AMINO_ACID" name="ARG">
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="CB" atom_type="C" hetero="None"/>
    <atom name="HA" atom_type="H" hetero="CA"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="H" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="NE" atom_type="N" hetero="None"/>
    <atom name="CG" atom_type="C" hetero="None"/>
    <atom name="CD" atom_type="C" hetero="None"/>
    <atom name="CZ" atom_type="C" hetero="None"/>
    <atom name="NH1" atom_type="N" hetero="None"/>
    <atom name="NH2" atom_type="N" hetero="None"/>
    <atom name="HE" atom_type="H" hetero="NE"/>
    <atom name="HD3" atom_type="H" hetero="CD"/>
    <atom name="HD2" atom_type="H" hetero="CD"/>
    <atom name="HG2" atom_type="H" hetero="CG"/>
    <atom name="HG3" atom_type="H" hetero="CG"/>
    <atom name="HH22" atom_type="H" hetero="NH2"/>
    <atom name="HH21" atom_type="H" hetero="NH2"/>
    <atom name="HH12" atom_type="H" hetero="NH1"/>
    <atom name="HH11" atom_type="H" hetero="NH1"/>
    <atom name="HB3" atom_type="H" hetero="CB"/>
    <atom name="HB2" atom_type="H" hetero="CB"/>
    <backbone>
      <atom_name name="N"/>
      <atom_name name="CA"/>
      <atom_name name="HA"/>
      <atom_name name="C"/>
    </backbone>
    <sidechain>
      <atom_name name="CB"/>
      <atom_name name="NE"/>
      <atom_name name="CG"/>
      <atom_name name="CD"/>
      <atom_name name="CZ"/>
      <atom_name name="NH1"/>
      <atom_name name="NH2"/>
      <atom_name name="HE"/>
      <atom_name name="HD3"/>
      <atom_name name="HD2"/>
      <atom_name name="HG2"/>
      <atom_name name="HG3"/>
      <atom_name name="HH22"/>
      <atom_name name="HH21"/>
      <atom_name name="HH12"/>
      <atom_name name="HH11"/>
      <atom_name name="HB3"/>
      <atom_name name="HB2"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HB2"/>
      <atom_name name="HB3"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HG2"/>
      <atom_name name="HG3"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HD2"/>
      <atom_name name="HD3"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HH11"/>
      <atom_name name="HH12"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HH21"/>
      <atom_name name="HH22"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>
  <residue residue_type="AMINO_ACID" name="TRP">
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="CB" atom_type="C" hetero="None"/>
    <atom name="HA" atom_type="H" hetero="CA"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="H" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="HH2" atom_type="H" hetero="CH2"/>
    <atom name="CZ2" atom_type="C" hetero="None"/>
    <atom name="CZ3" atom_type="C" hetero="None"/>
    <atom name="HZ2" atom_type="H" hetero="CZ2"/>
    <atom name="CG" atom_type="C" hetero="None"/>
    <atom name="CE3" atom_type="C" hetero="None"/>
    <atom name="CE2" atom_type="C" hetero="None"/>
    <atom name="CD2" atom_type="C" hetero="None"/>
    <atom name="CD1" atom_type="C" hetero="None"/>
    <atom name="HE1" atom_type="H" hetero="NE1"/>
    <atom name="HD1" atom_type="H" hetero="CD1"/>
    <atom name="HE3" atom_type="H" hetero="CE3"/>
    <atom name="CH2" atom_type="C" hetero="None"/>
    <atom name="HB3" atom_type="H" hetero="CB"/>
    <atom name="HZ3" atom_type="H" hetero="CZ3"/>
    <atom name="NE1" atom_type="N" hetero="None"/>
    <atom name="HB2" atom_type="H" hetero="CB"/>
    <backbone>
      <atom_name name="N"/>
      <atom_name name="CA"/>
      <atom_name name="HA"/>
      <atom_name name="C"/>
    </backbone>
    <sidechain>
      <atom_name name="CB"/>
      <atom_name name="HH2"/>
      <atom_name name="CZ2"/>
      <atom_name name="CZ3"/>
      <atom_name name="HZ2"/>
      <atom_name name="CG"/>
      <atom_name name="CE3"/>
      <atom_name name="CE2"/>
      <atom_name name="CD2"/>
      <atom_name name="CD1"/>
      <atom_name name="HE1"/>
      <atom_name name="HD1"/>
      <atom_name name="HE3"/>
      <atom_name name="CH2"/>
      <atom_name name="HB3"/>
      <atom_name name="HZ3"/>
      <atom_name name="NE1"/>
      <atom_name name="HB2"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HB2"/>
      <atom_name name="HB3"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>
  <residue residue_type="AMINO_ACID" name="ALA">
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="CB" atom_type="C" hetero="None"/>
    <atom name="HA" atom_type="H" hetero="CA"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="H" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="HB1" atom_type="H" hetero="CB"/>
    <atom name="HB3" atom_type="H" hetero="CB"/>
    <atom name="HB2" atom_type="H" hetero="CB"/>
    <backbone>
      <atom_name name="N"/>
      <atom_name name="CA"/>
      <atom_name name="HA"/>
      <atom_name name="C"/>
    </backbone>
    <sidechain>
      <atom_name name="CB"/>
      <atom_name name="HB1"/>
      <atom_name name="HB3"/>
      <atom_name name="HB2"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="METHYL">
      <atom_name name="HB1"/>
      <atom_name name="HB2"/>
      <atom_name name="HB3"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>
  <residue residue_type="AMINO_ACID" name="VAL">
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="CB" atom_type="C" hetero="None"/>
    <atom name="HA" atom_type="H" hetero="CA"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="H" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="CG2" atom_type="C" hetero="None"/>
    <atom name="HG22" atom_type="H" hetero="CG2"/>
    <atom name="HG21" atom_type="H" hetero="CG2"/>
    <atom name="CG1" atom_type="C" hetero="None"/>
    <atom name="HG11" atom_type="H" hetero="CG1"/>
    <atom name="HG12" atom_type="H" hetero="CG1"/>
    <atom name="HG13" atom_type="H" hetero="CG1"/>
    <atom name="HB" atom_type="H" hetero="CB"/>
    <atom name="HG23" atom_type="H" hetero="CG2"/>
    <backbone>
      <atom_name name="N"/>
      <atom_name name="CA"/>
      <atom_name name="HA"/>
      <atom_name name="C"/>
    </backbone>
    <sidechain>
      <atom_name name="CB"/>
      <atom_name name="CG2"/>
      <atom_name name="HG22"/>
      <atom_name name="HG21"/>
      <atom_name name="CG1"/>
      <atom_name name="HG11"/>
      <atom_name name="HG12"/>
      <atom_name name="HG13"/>
      <atom_name name="HB"/>
      <atom_name name="HG23"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="ISOPROPYL">
      <atom_name name="HG11"/>
      <atom_name name="HG12"/>
      <atom_name name="HG13"/>
      <atom_name name="HG21"/>
      <atom_name name="HG22"/>
      <atom_name name="HG23"/>
    </equivalent_group>
    <equivalent_group group_type="METHYL">
      <atom_name name="HG21"/>
      <atom_name name="HG22"/>
      <atom_name name="HG23"/>
    </equivalent_group>
    <equivalent_group group_type="METHYL">
      <atom_name name="HG11"/>
      <atom_name name="HG12"/>
      <atom_name name="HG13"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>
  <residue residue_type="AMINO_ACID" name="GLU">
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="CB" atom_type="C" hetero="None"/>
    <atom name="HA" atom_type="H" hetero="CA"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="H" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="HG2" atom_type="H" hetero="CG"/>
    <atom name="HG3" atom_type="H" hetero="CG"/>
    <atom name="CD" atom_type="C" hetero="None"/>
    <atom name="CG" atom_type="C" hetero="None"/>
    <atom name="OE2" atom_type="O" hetero="None"/>
    <atom name="OE1" atom_type="O" hetero="None"/>
    <atom name="HB3" atom_type="H" hetero="CB"/>
    <atom name="HB2" atom_type="H" hetero="CB"/>
    <backbone>
      <atom_name name="N"/>
      <atom_name name="CA"/>
      <atom_name name="HA"/>
      <atom_name name="C"/>
    </backbone>
    <sidechain>
      <atom_name name="CB"/>
      <atom_name name="HG2"/>
      <atom_name name="HG3"/>
      <atom_name name="CD"/>
      <atom_name name="CG"/>
      <atom_name name="OE2"/>
      <atom_name name="OE1"/>
      <atom_name name="HB3"/>
      <atom_name name="HB2"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HB2"/>
      <atom_name name="HB3"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HG2"/>
      <atom_name name="HG3"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>
  <residue residue_type="AMINO_ACID" name="TYR">
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="CB" atom_type="C" hetero="None"/>
    <atom name="HA" atom_type="H" hetero="CA"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="H" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="HE2" atom_type="H" hetero="CE2"/>
    <atom name="CE1" atom_type="C" hetero="None"/>
    <atom name="HD1" atom_type="H" hetero="CD1"/>
    <atom name="OH" atom_type="O" hetero="None"/>
    <atom name="HB2" atom_type="H" hetero="CB"/>
    <atom name="CG" atom_type="C" hetero="None"/>
    <atom name="HE1" atom_type="H" hetero="CE1"/>
    <atom name="CZ" atom_type="C" hetero="None"/>
    <atom name="HH" atom_type="H" hetero="None"/>
    <atom name="HD2" atom_type="H" hetero="CD2"/>
    <atom name="CE2" atom_type="C" hetero="None"/>
    <atom name="CD2" atom_type="C" hetero="None"/>
    <atom name="HB3" atom_type="H" hetero="CB"/>
    <atom name="CD1" atom_type="C" hetero="None"/>
    <backbone>
      <atom_name name="N"/>
      <atom_name name="CA"/>
      <atom_name name="HA"/>
      <atom_name name="C"/>
    </backbone>
    <sidechain>
      <atom_name name="CB"/>
      <atom_name name="HE2"/>
      <atom_name name="CE1"/>
      <atom_name name="HD1"/>
      <atom_name name="OH"/>
      <atom_name name="HB2"/>
      <atom_name name="CG"/>
      <atom_name name="HE1"/>
      <atom_name name="CZ"/>
      <atom_name name="HH"/>
      <atom_name name="HD2"/>
      <atom_name name="CE2"/>
      <atom_name name="CD2"/>
      <atom_name name="HB3"/>
      <atom_name name="CD1"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="AROMATIC">
      <atom_name name="HD1"/>
      <atom_name name="HD2"/>
    </equivalent_group>
    <equivalent_group group_type="AROMATIC">
      <atom_name name="HE1"/>
      <atom_name name="HE2"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HB2"/>
      <atom_name name="HB3"/>
    </equivalent_group>
    <equivalent_group group_type="AROMATIC">
      <atom_name name="HD1"/>
      <atom_name name="HD2"/>
      <atom_name name="HE1"/>
      <atom_name name="HE2"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>
  <residue residue_type="AMINO_ACID" name="MET">
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="CB" atom_type="C" hetero="None"/>
    <atom name="HA" atom_type="H" hetero="CA"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="H" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="HG2" atom_type="H" hetero="CG"/>
    <atom name="HE1" atom_type="H" hetero="CE"/>
    <atom name="HE2" atom_type="H" hetero="CE"/>
    <atom name="HE3" atom_type="H" hetero="CE"/>
    <atom name="CG" atom_type="C" hetero="None"/>
    <atom name="HG3" atom_type="H" hetero="CG"/>
    <atom name="CE" atom_type="C" hetero="None"/>
    <atom name="SD" atom_type="S" hetero="None"/>
    <atom name="HB3" atom_type="H" hetero="CB"/>
    <atom name="HB2" atom_type="H" hetero="CB"/>
    <backbone>
      <atom_name name="N"/>
      <atom_name name="CA"/>
      <atom_name name="HA"/>
      <atom_name name="C"/>
    </backbone>
    <sidechain>
      <atom_name name="CB"/>
      <atom_name name="HG2"/>
      <atom_name name="HE1"/>
      <atom_name name="HE2"/>
      <atom_name name="HE3"/>
      <atom_name name="CG"/>
      <atom_name name="HG3"/>
      <atom_name name="CE"/>
      <atom_name name="SD"/>
      <atom_name name="HB3"/>
      <atom_name name="HB2"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="METHYL">
      <atom_name name="HE1"/>
      <atom_name name="HE2"/>
      <atom_name name="HE3"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HB2"/>
      <atom_name name="HB3"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HG2"/>
      <atom_name name="HG3"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>
 <residue residue_type="AMINO_ACID" name="CYC">      
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="CB" atom_type="C" hetero="None"/>
    <atom name="HA" atom_type="H" hetero="CA"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="N" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="SG" atom_type="S" hetero="None"/>
    <atom name="HG" atom_type="H" hetero="None"/>
    <atom name="HB3" atom_type="H" hetero="CB"/>
    <atom name="HB2" atom_type="H" hetero="CB"/>
    <atom name="CG" atom_type="C" hetero="None"/>
    <atom name="HG3" atom_type="H" hetero="CG"/>
    <atom name="HG2" atom_type="H" hetero="CG"/> 
    <atom name="CD" atom_type="C" hetero="None"/>
    <atom name="HE22" atom_type="H" hetero="NE2"/>
    <atom name="HE21" atom_type="H" hetero="NE2"/>
    <atom name="NE2" atom_type="N" hetero="None"/> 
    <atom name="OE1" atom_type="O" hetero="None"/>
    <atom name="OC" atom_type="O" hetero="None"/>
 <backbone>
      <atom_name name="N"/>
      <atom_name name="CA"/>
      <atom_name name="HA"/>
      <atom_name name="C"/>
    </backbone>
    <sidechain>
      <atom_name name="CB"/>
      <atom_name name="HB2"/>
      <atom_name name="HB3"/>
      <atom_name name="SG"/>
      <atom_name name="CG"/>
      <atom_name name="HG3"/>
      <atom_name name="HG2"/> 
      <atom_name name="CD"/>
      <atom_name name="OC"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="OE1"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="OE1"/>
      <atom_name name="NE2"/>
      <atom_name name="HE22"/>
      <atom_name name="HE21"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="OE1"/>
      <atom_name name="NE2"/>
      <atom_name name="HE22"/>
      <atom_name name="HE21"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HB2"/>
      <atom_name name="HB3"/>
      <atom_name name="HG2"/>
      <atom_name name="HG3"/>  
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="HE22"/>
      <atom_name name="HE21"/>
    </equivalent_group>
  </residue>
 <residue residue_type="AMINO_ACID" name="GLX">     
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="CB" atom_type="C" hetero="None"/>
    <atom name="HA" atom_type="H" hetero="CA"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="H" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="HG2" atom_type="H" hetero="CG"/>
    <atom name="CG" atom_type="C" hetero="None"/>
    <atom name="HG3" atom_type="H" hetero="CG"/>
    <atom name="CD" atom_type="C" hetero="None"/>
    <atom name="HE22" atom_type="H" hetero="NE2"/>
    <atom name="HE21" atom_type="H" hetero="NE2"/>
    <atom name="NE2" atom_type="N" hetero="None"/>
    <atom name="OE1" atom_type="O" hetero="None"/>
    <atom name="HB3" atom_type="H" hetero="CB"/>
    <atom name="HB2" atom_type="H" hetero="CB"/>
    <backbone>
      <atom_name name="N"/>
      <atom_name name="CA"/>
      <atom_name name="HA"/>
      <atom_name name="C"/>
    </backbone>
    <sidechain>
      <atom_name name="CB"/>
      <atom_name name="HG2"/>
      <atom_name name="CG"/>
      <atom_name name="HG3"/>
      <atom_name name="CD"/>
      <atom_name name="HE22"/>
      <atom_name name="HE21"/>
      <atom_name name="NE2"/>
      <atom_name name="OE1"/>
      <atom_name name="HB3"/>
      <atom_name name="HB2"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HB2"/>
      <atom_name name="HB3"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HG2"/>
      <atom_name name="HG3"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HE21"/>
      <atom_name name="HE22"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>
  <residue residue_type="AMINO_ACID" name="GLI">
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="H" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="HA2" atom_type="H" hetero="CA"/>
    <atom name="HA3" atom_type="H" hetero="CA"/>
    <backbone>
      <atom_name name="C"/>
      <atom_name name="N"/>
      <atom_name name="CA"/>
    </backbone>
    <sidechain>
      <atom_name name="HA3"/>
      <atom_name name="HA2"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HA2"/>
      <atom_name name="HA3"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>

<residue residue_type="AMINO_ACID" name="NLE">    
    <atom name="C" atom_type="C" hetero="None"/>
    <atom name="H" atom_type="H" hetero="N"/>
    <atom name="CA" atom_type="C" hetero="None"/>
    <atom name="O" atom_type="O" hetero="None"/>
    <atom name="N" atom_type="N" hetero="None"/>
    <atom name="CB" atom_type="C" hetero="None"/>
    <atom name="HA" atom_type="H" hetero="CA"/>
    <atom name="O'" atom_type="O" hetero="None"/>
    <atom name="O''" atom_type="O" hetero="None"/>
    <atom name="NT" atom_type="N" hetero="None"/>
    <atom name="HT" atom_type="H" hetero="NT"/>
    <atom name="H1" atom_type="H" hetero="N"/>
    <atom name="H2" atom_type="H" hetero="N"/>
    <atom name="H3" atom_type="H" hetero="N"/>
    <atom name="CG" atom_type="C" hetero="None"/>
    <atom name="CE1" atom_type="C" hetero="None"/>
    <atom name="CD" atom_type="C" hetero="None"/>
    <atom name="HD3" atom_type="H" hetero="CD"/>
    <atom name="HD2" atom_type="H" hetero="CD"/>
    <atom name="HE12" atom_type="H" hetero="CE1"/>
    <atom name="HE11" atom_type="H" hetero="CE1"/>
    <atom name="HE13" atom_type="H" hetero="CE1"/>
    <atom name="HG2" atom_type="H" hetero="CG"/>
    <atom name="HG3" atom_type="H" hetero="CG"/>
    <atom name="HB3" atom_type="H" hetero="CB"/>
    <atom name="HB2" atom_type="H" hetero="CB"/>
    <backbone>
      <atom_name name="N"/>
      <atom_name name="CA"/>
      <atom_name name="HA"/>
      <atom_name name="C"/>
    </backbone>
    <sidechain>
      <atom_name name="CB"/>
      <atom_name name="CG"/>
      <atom_name name="CE1"/>
      <atom_name name="CD"/>
      <atom_name name="HD3"/>
      <atom_name name="HD2"/>
      <atom_name name="HE12"/>
      <atom_name name="HE13"/>
      <atom_name name="HE11"/>
      <atom_name name="HG2"/>
      <atom_name name="HG3"/>
      <atom_name name="HB3"/>
      <atom_name name="HB2"/>
    </sidechain>
    <terminus terminus_type="N_STANDARD">
      <atom_name name="H"/>
    </terminus>
    <terminus terminus_type="N_AMINYL">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </terminus>
    <terminus terminus_type="C_STANDARD">
      <atom_name name="O"/>
    </terminus>
    <terminus terminus_type="C_AMIDO">
      <atom_name name="O'"/>
      <atom_name name="NT"/>
      <atom_name name="HT"/>
    </terminus>
    <terminus terminus_type="C_CARBOXYL">
      <atom_name name="O'"/>
      <atom_name name="O''"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HB2"/>
      <atom_name name="HB3"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HG2"/>
      <atom_name name="HG3"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="HD2"/>
      <atom_name name="HD3"/>
    </equivalent_group>
    <equivalent_group group_type="METHYL">
      <atom_name name="HE12"/>
      <atom_name name="HE11"/>
      <atom_name name="HE13"/>
    </equivalent_group>
    <equivalent_group group_type="NTERMINUS">
      <atom_name name="H1"/>
      <atom_name name="H2"/>
      <atom_name name="H3"/>
    </equivalent_group>
  </residue>

  <residue residue_type="DNA_BASE" name="ADE">
    <atom name="C3'" atom_type="C" hetero="None"/>
    <atom name="O3'" atom_type="O" hetero="None"/>
    <atom name="O5'" atom_type="O" hetero="None"/>
    <atom name="C5'" atom_type="C" hetero="None"/>
    <atom name="C4'" atom_type="C" hetero="None"/>
    <atom name="O4'" atom_type="O" hetero="None"/>
    <atom name="C1'" atom_type="C" hetero="None"/>
    <atom name="C2'" atom_type="C" hetero="None"/>
    <atom name="H5'" atom_type="H" hetero="C5'"/>
    <atom name="H5''" atom_type="H" hetero="C5'"/>
    <atom name="H4'" atom_type="H" hetero="C4'"/>
    <atom name="H3'" atom_type="H" hetero="C3'"/>
    <atom name="H2'" atom_type="H" hetero="C2'"/>
    <atom name="H2''" atom_type="H" hetero="C2'"/>
    <atom name="H1'" atom_type="H" hetero="C1'"/>
    <atom name="P" atom_type="P" hetero="None"/>
    <atom name="OP1" atom_type="O" hetero="None"/>
    <atom name="OP2" atom_type="O" hetero="None"/>
    <atom name="HO3'" atom_type="H" hetero="None"/>
    <atom name="HO5'" atom_type="H" hetero="None"/>
    <atom name="N9" atom_type="N" hetero="None"/>
    <atom name="C8" atom_type="C" hetero="None"/>
    <atom name="N7" atom_type="N" hetero="None"/>
    <atom name="C5" atom_type="C" hetero="None"/>
    <atom name="C6" atom_type="C" hetero="None"/>
    <atom name="N6" atom_type="N" hetero="None"/>
    <atom name="N1" atom_type="N" hetero="None"/>
    <atom name="C2" atom_type="C" hetero="None"/>
    <atom name="N3" atom_type="N" hetero="None"/>
    <atom name="C4" atom_type="C" hetero="None"/>
    <atom name="H8" atom_type="H" hetero="C8"/>
    <atom name="H61" atom_type="H" hetero="N6"/>
    <atom name="H62" atom_type="H" hetero="N6"/>
    <atom name="H2" atom_type="H" hetero="C2"/>
    <backbone>
      <atom_name name="C1'"/>
      <atom_name name="H1'"/>
      <atom_name name="C2'"/>
      <atom_name name="H2'"/>
      <atom_name name="H2''"/>
      <atom_name name="C3'"/>
      <atom_name name="O3'"/>
      <atom_name name="H3'"/>
      <atom_name name="C4'"/>
      <atom_name name="O4'"/>
      <atom_name name="H4'"/>
      <atom_name name="O5'"/>
      <atom_name name="C5'"/>
      <atom_name name="H5'"/>
      <atom_name name="H5''"/>
    </backbone>
    <sidechain>
      <atom_name name="N1"/>
      <atom_name name="C2"/>
      <atom_name name="H2"/>
      <atom_name name="N3"/>
      <atom_name name="C4"/>
      <atom_name name="C5"/>
      <atom_name name="C6"/>
      <atom_name name="N6"/>
      <atom_name name="H61"/>
      <atom_name name="H62"/>
      <atom_name name="N7"/>
      <atom_name name="C8"/>
      <atom_name name="H8"/>
      <atom_name name="N9"/>
    </sidechain>
    <terminus terminus_type='C5_PRIME_PHOSPHATE'>
      <atom_name name="P"/>
      <atom_name name="OP1"/>
      <atom_name name="OP2"/>
    </terminus>
    <terminus terminus_type='C5_PRIME_HYDROXYL'>
      <atom_name name="HO5'"/>
    </terminus>
    <terminus terminus_type='C3_PRIME_HYDROXYL'>
      <atom_name name="HO3'"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="H5'"/>
      <atom_name name="H5''"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="H2'"/>
      <atom_name name="H2''"/>
    </equivalent_group>
    <equivalent_group group_type="AROMATIC">
      <atom_name name="H61"/>
      <atom_name name="H62"/>
    </equivalent_group>
  </residue>
  <residue residue_type="DNA_BASE" name="CYT">
    <atom name="C3'" atom_type="C" hetero="None"/>
    <atom name="O3'" atom_type="O" hetero="None"/>
    <atom name="O5'" atom_type="O" hetero="None"/>
    <atom name="C5'" atom_type="C" hetero="None"/>
    <atom name="C4'" atom_type="C" hetero="None"/>
    <atom name="O4'" atom_type="O" hetero="None"/>
    <atom name="C1'" atom_type="C" hetero="None"/>
    <atom name="C2'" atom_type="C" hetero="None"/>
    <atom name="H5'" atom_type="H" hetero="C5'"/>
    <atom name="H5''" atom_type="H" hetero="C5'"/>
    <atom name="H4'" atom_type="H" hetero="C4'"/>
    <atom name="H3'" atom_type="H" hetero="C3'"/>
    <atom name="H2'" atom_type="H" hetero="C2'"/>
    <atom name="H2''" atom_type="H" hetero="C2'"/>
    <atom name="H1'" atom_type="H" hetero="C1'"/>
    <atom name="P" atom_type="P" hetero="None"/>
    <atom name="OP1" atom_type="O" hetero="None"/>
    <atom name="OP2" atom_type="O" hetero="None"/>
    <atom name="HO3'" atom_type="H" hetero="None"/>
    <atom name="HO5'" atom_type="H" hetero="None"/>
    <atom name="N1" atom_type="N" hetero="None"/>
    <atom name="C6" atom_type="C" hetero="None"/>
    <atom name="C5" atom_type="C" hetero="None"/>
    <atom name="C4" atom_type="C" hetero="None"/>
    <atom name="N4" atom_type="N" hetero="None"/>
    <atom name="N3" atom_type="N" hetero="None"/>
    <atom name="C2" atom_type="C" hetero="None"/>
    <atom name="O2" atom_type="O" hetero="None"/>
    <atom name="H41" atom_type="H" hetero="N4"/>
    <atom name="H42" atom_type="H" hetero="N4"/>
    <atom name="H5" atom_type="H" hetero="C5"/>
    <atom name="H6" atom_type="H" hetero="C6"/>
    <backbone>
      <atom_name name="C1'"/>
      <atom_name name="H1'"/>
      <atom_name name="C2'"/>
      <atom_name name="H2'"/>
      <atom_name name="H2''"/>
      <atom_name name="C3'"/>
      <atom_name name="O3'"/>
      <atom_name name="H3'"/>
      <atom_name name="C4'"/>
      <atom_name name="O4'"/>
      <atom_name name="H4'"/>
      <atom_name name="O5'"/>
      <atom_name name="C5'"/>
      <atom_name name="H5'"/>
      <atom_name name="H5''"/>
    </backbone>
    <sidechain>
      <atom_name name="N1"/>
      <atom_name name="C6"/>
      <atom_name name="C5"/>
      <atom_name name="C4"/>
      <atom_name name="N4"/>
      <atom_name name="N3"/>
      <atom_name name="C2"/>
      <atom_name name="O2"/>
      <atom_name name="H41"/>
      <atom_name name="H42"/>
      <atom_name name="H5"/>
      <atom_name name="H6"/>
    </sidechain>
    <terminus terminus_type='C5_PRIME_PHOSPHATE'>
      <atom_name name="P"/>
      <atom_name name="OP1"/>
      <atom_name name="OP2"/>
    </terminus>
    <terminus terminus_type='C5_PRIME_HYDROXYL'>
      <atom_name name="HO5'"/>
    </terminus>
    <terminus terminus_type='C3_PRIME_HYDROXYL'>
      <atom_name name="HO3'"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="H5'"/>
      <atom_name name="H5''"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="H2'"/>
      <atom_name name="H2''"/>
    </equivalent_group>
    <equivalent_group group_type="AROMATIC">
      <atom_name name="H41"/>
      <atom_name name="H42"/>
    </equivalent_group>
  </residue>
  <residue residue_type="DNA_BASE" name="GUA">
    <atom name="C3'" atom_type="C" hetero="None"/>
    <atom name="O3'" atom_type="O" hetero="None"/>
    <atom name="O5'" atom_type="O" hetero="None"/>
    <atom name="C5'" atom_type="C" hetero="None"/>
    <atom name="C4'" atom_type="C" hetero="None"/>
    <atom name="O4'" atom_type="O" hetero="None"/>
    <atom name="C1'" atom_type="C" hetero="None"/>
    <atom name="C2'" atom_type="C" hetero="None"/>
    <atom name="H5'" atom_type="H" hetero="C5'"/>
    <atom name="H5''" atom_type="H" hetero="C5'"/>
    <atom name="H4'" atom_type="H" hetero="C4'"/>
    <atom name="H3'" atom_type="H" hetero="C3'"/>
    <atom name="H2'" atom_type="H" hetero="C2'"/>
    <atom name="H2''" atom_type="H" hetero="C2'"/>
    <atom name="H1'" atom_type="H" hetero="C1'"/>
    <atom name="P" atom_type="P" hetero="None"/>
    <atom name="OP1" atom_type="O" hetero="None"/>
    <atom name="OP2" atom_type="O" hetero="None"/>
    <atom name="HO3'" atom_type="H" hetero="None"/>
    <atom name="HO5'" atom_type="H" hetero="None"/>
    <atom name="N9" atom_type="N" hetero="None"/>
    <atom name="C8" atom_type="C" hetero="None"/>
    <atom name="N7" atom_type="N" hetero="None"/>
    <atom name="C5" atom_type="C" hetero="None"/>
    <atom name="C6" atom_type="C" hetero="None"/>
    <atom name="O6" atom_type="O" hetero="None"/>
    <atom name="N1" atom_type="N" hetero="None"/>
    <atom name="C2" atom_type="C" hetero="None"/>
    <atom name="N2" atom_type="N" hetero="None"/>
    <atom name="N3" atom_type="N" hetero="None"/>
    <atom name="C4" atom_type="C" hetero="None"/>
    <atom name="H8" atom_type="H" hetero="C8"/>
    <atom name="H1" atom_type="H" hetero="N1"/>
    <atom name="H21" atom_type="H" hetero="N2"/>
    <atom name="H22" atom_type="H" hetero="N2"/>
    <backbone>
      <atom_name name="C1'"/>
      <atom_name name="H1'"/>
      <atom_name name="C2'"/>
      <atom_name name="H2'"/>
      <atom_name name="H2''"/>
      <atom_name name="C3'"/>
      <atom_name name="O3'"/>
      <atom_name name="H3'"/>
      <atom_name name="C4'"/>
      <atom_name name="O4'"/>
      <atom_name name="H4'"/>
      <atom_name name="O5'"/>
      <atom_name name="C5'"/>
      <atom_name name="H5'"/>
      <atom_name name="H5''"/>
    </backbone>
    <sidechain>
      <atom_name name="N9"/>
      <atom_name name="C8"/>
      <atom_name name="N7"/>
      <atom_name name="C5"/>
      <atom_name name="C6"/>
      <atom_name name="O6"/>
      <atom_name name="N1"/>
      <atom_name name="C2"/>
      <atom_name name="N2"/>
      <atom_name name="N3"/>
      <atom_name name="C4"/>
      <atom_name name="H8"/>
      <atom_name name="H1"/>
      <atom_name name="H21"/>
      <atom_name name="H22"/>
    </sidechain>
    <terminus terminus_type='C5_PRIME_PHOSPHATE'>
      <atom_name name="P"/>
      <atom_name name="OP1"/>
      <atom_name name="OP2"/>
    </terminus>
    <terminus terminus_type='C5_PRIME_HYDROXYL'>
      <atom_name name="HO5'"/>
    </terminus>
    <terminus terminus_type='C3_PRIME_HYDROXYL'>
      <atom_name name="HO3'"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="H5'"/>
      <atom_name name="H5''"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="H2'"/>
      <atom_name name="H2''"/>
    </equivalent_group>
    <equivalent_group group_type="AROMATIC">
      <atom_name name="H21"/>
      <atom_name name="H22"/>
    </equivalent_group>
  </residue>
  <residue residue_type="DNA_BASE" name="THY">
    <atom name="C3'" atom_type="C" hetero="None"/>
    <atom name="O3'" atom_type="O" hetero="None"/>
    <atom name="O5'" atom_type="O" hetero="None"/>
    <atom name="C5'" atom_type="C" hetero="None"/>
    <atom name="C4'" atom_type="C" hetero="None"/>
    <atom name="O4'" atom_type="O" hetero="None"/>
    <atom name="C1'" atom_type="C" hetero="None"/>
    <atom name="C2'" atom_type="C" hetero="None"/>
    <atom name="H5'" atom_type="H" hetero="C5'"/>
    <atom name="H5''" atom_type="H" hetero="C5'"/>
    <atom name="H4'" atom_type="H" hetero="C4'"/>
    <atom name="H3'" atom_type="H" hetero="C3'"/>
    <atom name="H2'" atom_type="H" hetero="C2'"/>
    <atom name="H2''" atom_type="H" hetero="C2'"/>
    <atom name="H1'" atom_type="H" hetero="C1'"/>
    <atom name="P" atom_type="P" hetero="None"/>
    <atom name="OP1" atom_type="O" hetero="None"/>
    <atom name="OP2" atom_type="O" hetero="None"/>
    <atom name="HO3'" atom_type="H" hetero="None"/>
    <atom name="HO5'" atom_type="H" hetero="None"/>
    <atom name="N1" atom_type="N" hetero="None"/>
    <atom name="C6" atom_type="C" hetero="None"/>
    <atom name="C5" atom_type="C" hetero="None"/>
    <atom name="C4" atom_type="C" hetero="None"/>
    <atom name="O4" atom_type="O" hetero="None"/>
    <atom name="N3" atom_type="N" hetero="None"/>
    <atom name="C2" atom_type="C" hetero="None"/>
    <atom name="O2" atom_type="O" hetero="None"/>
    <atom name="C7" atom_type="C" hetero="None"/>
    <atom name="H3" atom_type="H" hetero="N3"/>
    <atom name="H71" atom_type="H" hetero="C7"/>
    <atom name="H72" atom_type="H" hetero="C7"/>
    <atom name="H73" atom_type="H" hetero="C7"/>
    <atom name="H6" atom_type="H" hetero="C6"/>
    <backbone>
      <atom_name name="C1'"/>
      <atom_name name="H1'"/>
      <atom_name name="C2'"/>
      <atom_name name="H2'"/>
      <atom_name name="H2''"/>
      <atom_name name="C3'"/>
      <atom_name name="O3'"/>
      <atom_name name="H3'"/>
      <atom_name name="C4'"/>
      <atom_name name="O4'"/>
      <atom_name name="H4'"/>
      <atom_name name="O5'"/>
      <atom_name name="C5'"/>
      <atom_name name="H5'"/>
      <atom_name name="H5''"/>
    </backbone>
    <sidechain>
      <atom_name name="N1"/>
      <atom_name name="C6"/>
      <atom_name name="C5"/>
      <atom_name name="C4"/>
      <atom_name name="O4"/>
      <atom_name name="N3"/>
      <atom_name name="C2"/>
      <atom_name name="O2"/>
      <atom_name name="C7"/>
      <atom_name name="H3"/>
      <atom_name name="H71"/>
      <atom_name name="H72"/>
      <atom_name name="H73"/>
      <atom_name name="H6"/>
    </sidechain>
    <terminus terminus_type='C5_PRIME_PHOSPHATE'>
      <atom_name name="P"/>
      <atom_name name="OP1"/>
      <atom_name name="OP2"/>
    </terminus>
    <terminus terminus_type='C5_PRIME_HYDROXYL'>
      <atom_name name="HO5'"/>
    </terminus>
    <terminus terminus_type='C3_PRIME_HYDROXYL'>
      <atom_name name="HO3'"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="H5'"/>
      <atom_name name="H5''"/>
    </equivalent_group>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="H2'"/>
      <atom_name name="H2''"/>
    </equivalent_group>
    <equivalent_group group_type="METHYL">
      <atom_name name="H71"/>
      <atom_name name="H72"/>
      <atom_name name="H73"/>
    </equivalent_group>
  </residue>
  <residue residue_type="RNA_BASE" name="ADE">
    <atom name="C3'" atom_type="C" hetero="None"/>
    <atom name="O3'" atom_type="O" hetero="None"/>
    <atom name="O5'" atom_type="O" hetero="None"/>
    <atom name="C5'" atom_type="C" hetero="None"/>
    <atom name="C4'" atom_type="C" hetero="None"/>
    <atom name="O4'" atom_type="O" hetero="None"/>
    <atom name="C1'" atom_type="C" hetero="None"/>
    <atom name="C2'" atom_type="C" hetero="None"/>
    <atom name="H5'" atom_type="H" hetero="C5'"/>
    <atom name="H5''" atom_type="H" hetero="C5'"/>
    <atom name="H4'" atom_type="H" hetero="C4'"/>
    <atom name="H3'" atom_type="H" hetero="C3'"/>
    <atom name="H2'" atom_type="H" hetero="C2'"/>
    <atom name="O2'" atom_type="H" hetero="None"/>
    <atom name="HO2'" atom_type="H" hetero="None"/>
    <atom name="H1'" atom_type="H" hetero="C1'"/>
    <atom name="P" atom_type="P" hetero="None"/>
    <atom name="OP1" atom_type="O" hetero="None"/>
    <atom name="OP2" atom_type="O" hetero="None"/>
    <atom name="HO3'" atom_type="H" hetero="None"/>
    <atom name="HO5'" atom_type="H" hetero="None"/>
    <atom name="N9" atom_type="N" hetero="None"/>
    <atom name="C8" atom_type="C" hetero="None"/>
    <atom name="N7" atom_type="N" hetero="None"/>
    <atom name="C5" atom_type="C" hetero="None"/>
    <atom name="C6" atom_type="C" hetero="None"/>
    <atom name="N6" atom_type="N" hetero="None"/>
    <atom name="N1" atom_type="N" hetero="None"/>
    <atom name="C2" atom_type="C" hetero="None"/>
    <atom name="N3" atom_type="N" hetero="None"/>
    <atom name="C4" atom_type="C" hetero="None"/>
    <atom name="H8" atom_type="H" hetero="C8"/>
    <atom name="H61" atom_type="H" hetero="N6"/>
    <atom name="H62" atom_type="H" hetero="N6"/>
    <atom name="H2" atom_type="H" hetero="C2"/>
    <backbone>
      <atom_name name="C1'"/>
      <atom_name name="H1'"/>
      <atom_name name="C2'"/>
      <atom_name name="H2'"/>
      <atom_name name="O2'"/>
      <atom_name name="HO2'"/>
      <atom_name name="C3'"/>
      <atom_name name="O3'"/>
      <atom_name name="H3'"/>
      <atom_name name="C4'"/>
      <atom_name name="O4'"/>
      <atom_name name="H4'"/>
      <atom_name name="O5'"/>
      <atom_name name="C5'"/>
      <atom_name name="H5'"/>
      <atom_name name="H5''"/>
    </backbone>
    <sidechain>
      <atom_name name="N1"/>
      <atom_name name="C2"/>
      <atom_name name="H2"/>
      <atom_name name="N3"/>
      <atom_name name="C4"/>
      <atom_name name="C5"/>
      <atom_name name="C6"/>
      <atom_name name="N6"/>
      <atom_name name="H61"/>
      <atom_name name="H62"/>
      <atom_name name="N7"/>
      <atom_name name="C8"/>
      <atom_name name="H8"/>
      <atom_name name="N9"/>
    </sidechain>
    <terminus terminus_type='C5_PRIME_PHOSPHATE'>
      <atom_name name="P"/>
      <atom_name name="OP1"/>
      <atom_name name="OP2"/>
    </terminus>
    <terminus terminus_type='C5_PRIME_HYDROXYL'>
      <atom_name name="HO5'"/>
    </terminus>
    <terminus terminus_type='C3_PRIME_HYDROXYL'>
      <atom_name name="HO3'"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="H5'"/>
      <atom_name name="H5''"/>
    </equivalent_group>
    <equivalent_group group_type="AROMATIC">
      <atom_name name="H61"/>
      <atom_name name="H62"/>
    </equivalent_group>
  </residue>
  <residue residue_type="RNA_BASE" name="CYT">
    <atom name="C3'" atom_type="C" hetero="None"/>
    <atom name="O3'" atom_type="O" hetero="None"/>
    <atom name="O5'" atom_type="O" hetero="None"/>
    <atom name="C5'" atom_type="C" hetero="None"/>
    <atom name="C4'" atom_type="C" hetero="None"/>
    <atom name="O4'" atom_type="O" hetero="None"/>
    <atom name="C1'" atom_type="C" hetero="None"/>
    <atom name="C2'" atom_type="C" hetero="None"/>
    <atom name="H5'" atom_type="H" hetero="C5'"/>
    <atom name="H5''" atom_type="H" hetero="C5'"/>
    <atom name="H4'" atom_type="H" hetero="C4'"/>
    <atom name="H3'" atom_type="H" hetero="C3'"/>
    <atom name="H2'" atom_type="H" hetero="C2'"/>
    <atom name="O2'" atom_type="O" hetero="None"/>
    <atom name="HO2'" atom_type="H" hetero="None"/>
    <atom name="H1'" atom_type="H" hetero="C1'"/>
    <atom name="P" atom_type="P" hetero="None"/>
    <atom name="OP1" atom_type="O" hetero="None"/>
    <atom name="OP2" atom_type="O" hetero="None"/>
    <atom name="HO3'" atom_type="H" hetero="None"/>
    <atom name="HO5'" atom_type="H" hetero="None"/>
    <atom name="N1" atom_type="N" hetero="None"/>
    <atom name="C6" atom_type="C" hetero="None"/>
    <atom name="C5" atom_type="C" hetero="None"/>
    <atom name="C4" atom_type="C" hetero="None"/>
    <atom name="N4" atom_type="N" hetero="None"/>
    <atom name="N3" atom_type="N" hetero="None"/>
    <atom name="C2" atom_type="C" hetero="None"/>
    <atom name="O2" atom_type="O" hetero="None"/>
    <atom name="H41" atom_type="H" hetero="N4"/>
    <atom name="H42" atom_type="H" hetero="N4"/>
    <atom name="H5" atom_type="H" hetero="C5"/>
    <atom name="H6" atom_type="H" hetero="C6"/>
    <backbone>
      <atom_name name="C1'"/>
      <atom_name name="H1'"/>
      <atom_name name="C2'"/>
      <atom_name name="H2'"/>
      <atom_name name="O2'"/>
      <atom_name name="HO2'"/>
      <atom_name name="C3'"/>
      <atom_name name="O3'"/>
      <atom_name name="H3'"/>
      <atom_name name="C4'"/>
      <atom_name name="O4'"/>
      <atom_name name="H4'"/>
      <atom_name name="O5'"/>
      <atom_name name="C5'"/>
      <atom_name name="H5'"/>
      <atom_name name="H5''"/>
    </backbone>
    <sidechain>
      <atom_name name="N1"/>
      <atom_name name="C6"/>
      <atom_name name="C5"/>
      <atom_name name="C4"/>
      <atom_name name="N4"/>
      <atom_name name="N3"/>
      <atom_name name="C2"/>
      <atom_name name="O2"/>
      <atom_name name="H41"/>
      <atom_name name="H42"/>
      <atom_name name="H5"/>
      <atom_name name="H6"/>
    </sidechain>
    <terminus terminus_type='C5_PRIME_PHOSPHATE'>
      <atom_name name="P"/>
      <atom_name name="OP1"/>
      <atom_name name="OP2"/>
    </terminus>
    <terminus terminus_type='C5_PRIME_HYDROXYL'>
      <atom_name name="HO5'"/>
    </terminus>
    <terminus terminus_type='C3_PRIME_HYDROXYL'>
      <atom_name name="HO3'"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="H5'"/>
      <atom_name name="H5''"/>
    </equivalent_group>
    <equivalent_group group_type="AROMATIC">
      <atom_name name="H41"/>
      <atom_name name="H42"/>
    </equivalent_group>
  </residue>
  <residue residue_type="RNA_BASE" name="GUA">
    <atom name="C3'" atom_type="C" hetero="None"/>
    <atom name="O3'" atom_type="O" hetero="None"/>
    <atom name="O5'" atom_type="O" hetero="None"/>
    <atom name="C5'" atom_type="C" hetero="None"/>
    <atom name="C4'" atom_type="C" hetero="None"/>
    <atom name="O4'" atom_type="O" hetero="None"/>
    <atom name="C1'" atom_type="C" hetero="None"/>
    <atom name="C2'" atom_type="C" hetero="None"/>
    <atom name="H5'" atom_type="H" hetero="C5'"/>
    <atom name="H5''" atom_type="H" hetero="C5'"/>
    <atom name="H4'" atom_type="H" hetero="C4'"/>
    <atom name="H3'" atom_type="H" hetero="C3'"/>
    <atom name="H2'" atom_type="H" hetero="C2'"/>
    <atom name="O2'" atom_type="O" hetero="None"/>
    <atom name="HO2'" atom_type="H" hetero="None"/>
    <atom name="H1'" atom_type="H" hetero="C1'"/>
    <atom name="P" atom_type="P" hetero="None"/>
    <atom name="OP1" atom_type="O" hetero="None"/>
    <atom name="OP2" atom_type="O" hetero="None"/>
    <atom name="HO3'" atom_type="H" hetero="None"/>
    <atom name="HO5'" atom_type="H" hetero="None"/>
    <atom name="N9" atom_type="N" hetero="None"/>
    <atom name="C8" atom_type="C" hetero="None"/>
    <atom name="N7" atom_type="N" hetero="None"/>
    <atom name="C5" atom_type="C" hetero="None"/>
    <atom name="C6" atom_type="C" hetero="None"/>
    <atom name="O6" atom_type="O" hetero="None"/>
    <atom name="N1" atom_type="N" hetero="None"/>
    <atom name="C2" atom_type="C" hetero="None"/>
    <atom name="N2" atom_type="N" hetero="None"/>
    <atom name="N3" atom_type="N" hetero="None"/>
    <atom name="C4" atom_type="C" hetero="None"/>
    <atom name="H8" atom_type="H" hetero="C8"/>
    <atom name="H1" atom_type="H" hetero="N1"/>
    <atom name="H21" atom_type="H" hetero="N2"/>
    <atom name="H22" atom_type="H" hetero="N2"/>
    <backbone>
      <atom_name name="C1'"/>
      <atom_name name="H1'"/>
      <atom_name name="C2'"/>
      <atom_name name="H2'"/>
      <atom_name name="O2'"/>
      <atom_name name="HO2'"/>
      <atom_name name="C3'"/>
      <atom_name name="O3'"/>
      <atom_name name="H3'"/>
      <atom_name name="C4'"/>
      <atom_name name="O4'"/>
      <atom_name name="H4'"/>
      <atom_name name="O5'"/>
      <atom_name name="C5'"/>
      <atom_name name="H5'"/>
      <atom_name name="H5''"/>
    </backbone>
    <sidechain>
      <atom_name name="N9"/>
      <atom_name name="C8"/>
      <atom_name name="N7"/>
      <atom_name name="C5"/>
      <atom_name name="C6"/>
      <atom_name name="O6"/>
      <atom_name name="N1"/>
      <atom_name name="C2"/>
      <atom_name name="N2"/>
      <atom_name name="N3"/>
      <atom_name name="C4"/>
      <atom_name name="H8"/>
      <atom_name name="H1"/>
      <atom_name name="H21"/>
      <atom_name name="H22"/>
    </sidechain>
    <terminus terminus_type='C5_PRIME_PHOSPHATE'>
      <atom_name name="P"/>
      <atom_name name="OP1"/>
      <atom_name name="OP2"/>
    </terminus>
    <terminus terminus_type='C5_PRIME_HYDROXYL'>
      <atom_name name="HO5'"/>
    </terminus>
    <terminus terminus_type='C3_PRIME_HYDROXYL'>
      <atom_name name="HO3'"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="H5'"/>
      <atom_name name="H5''"/>
    </equivalent_group>
    <equivalent_group group_type="AROMATIC">
      <atom_name name="H21"/>
      <atom_name name="H22"/>
    </equivalent_group>
  </residue>
  <residue residue_type="RNA_BASE" name="URA">
    <atom name="C3'" atom_type="C" hetero="None"/>
    <atom name="O3'" atom_type="O" hetero="None"/>
    <atom name="O5'" atom_type="O" hetero="None"/>
    <atom name="C5'" atom_type="C" hetero="None"/>
    <atom name="C4'" atom_type="C" hetero="None"/>
    <atom name="O4'" atom_type="O" hetero="None"/>
    <atom name="C1'" atom_type="C" hetero="None"/>
    <atom name="C2'" atom_type="C" hetero="None"/>
    <atom name="H5'" atom_type="H" hetero="C5'"/>
    <atom name="H5''" atom_type="H" hetero="C5'"/>
    <atom name="H4'" atom_type="H" hetero="C4'"/>
    <atom name="H3'" atom_type="H" hetero="C3'"/>
    <atom name="H2'" atom_type="H" hetero="C2'"/>
    <atom name="O2'" atom_type="O" hetero="None"/>
    <atom name="HO2'" atom_type="H" hetero="None"/>
    <atom name="H1'" atom_type="H" hetero="C1'"/>
    <atom name="P" atom_type="P" hetero="None"/>
    <atom name="OP1" atom_type="O" hetero="None"/>
    <atom name="OP2" atom_type="O" hetero="None"/>
    <atom name="HO3'" atom_type="H" hetero="None"/>
    <atom name="HO5'" atom_type="H" hetero="None"/>
    <atom name="N1" atom_type="N" hetero="None"/>
    <atom name="C6" atom_type="C" hetero="None"/>
    <atom name="C5" atom_type="C" hetero="None"/>
    <atom name="C4" atom_type="C" hetero="None"/>
    <atom name="O4" atom_type="O" hetero="None"/>
    <atom name="N3" atom_type="N" hetero="None"/>
    <atom name="C2" atom_type="C" hetero="None"/>
    <atom name="O2" atom_type="O" hetero="None"/>
    <atom name="H3" atom_type="H" hetero="N3"/>
    <atom name="H5" atom_type="H" hetero="C5"/>
    <atom name="H6" atom_type="H" hetero="C6"/>
    <backbone>
      <atom_name name="C1'"/>
      <atom_name name="H1'"/>
      <atom_name name="C2'"/>
      <atom_name name="H2'"/>
      <atom_name name="HO2'"/>
      <atom_name name="O2'"/>
      <atom_name name="C3'"/>
      <atom_name name="O3'"/>
      <atom_name name="H3'"/>
      <atom_name name="C4'"/>
      <atom_name name="O4'"/>
      <atom_name name="H4'"/>
      <atom_name name="O5'"/>
      <atom_name name="C5'"/>
      <atom_name name="H5'"/>
      <atom_name name="H5''"/>
    </backbone>
    <sidechain>
      <atom_name name="N1"/>
      <atom_name name="C6"/>
      <atom_name name="C5"/>
      <atom_name name="C4"/>
      <atom_name name="O4"/>
      <atom_name name="N3"/>
      <atom_name name="C2"/>
      <atom_name name="O2"/>
      <atom_name name="H3"/>
      <atom_name name="H5"/>
      <atom_name name="H6"/>
    </sidechain>
    <terminus terminus_type='C5_PRIME_PHOSPHATE'>
      <atom_name name="P"/>
      <atom_name name="OP1"/>
      <atom_name name="OP2"/>
    </terminus>
    <terminus terminus_type='C5_PRIME_HYDROXYL'>
      <atom_name name="HO5'"/>
    </terminus>
    <terminus terminus_type='C3_PRIME_HYDROXYL'>
      <atom_name name="HO3'"/>
    </terminus>
    <equivalent_group group_type="METHYLENE">
      <atom_name name="H5'"/>
      <atom_name name="H5''"/>
    </equivalent_group>
  </residue>
</topology>
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