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References

If you use ARIA, please quote the following reference(s):

  1. Rieping W., Habeck M., Bardiaux B., Bernard A., Malliavin T.E., Nilges M. (2007) ARIA2: automated NOE assignment and data integration in NMR structure calculation. Bioinformatics 23:381-382.

Further references:
  1. Bardiaux, B., Bernard, A., Rieping, W., Habeck, M., Malliavin, T. E., and Nilges, M. Graphical analysis of NMR structural quality and interactive contact map of NOE assignments in ARIA. BMC Struct Biol 8(1), 30, Jun (2008).
  2. Bardiaux, B., Bernard, A., Rieping, W., Habeck, M., Malliavin, T., and Nilges, M. Influence of different assignment conditions on the determination of symmetric homodimeric structures with ARIA. Proteins 75(3), 569–585, Sep (2008).
  3. Nilges M., Bernard A., Bardiaux B., Malliavin T.E., Habeck M., Rieping W. Accurate NMR Structures Through Minimization of an Extended Hybrid Energy. Structure 16,9:1305-1312 (2008)
  4. Linge, J. P., Habeck, M., Rieping, W., and Nilges, M. Correction of spin diffusion during iterative automated NOE assignment. J Magn Reson 167(2), 334–42, Apr (2004).
  5. Habeck, M., Rieping, W., Linge, J. P., and Nilges, M. NOE assignment with ARIA 2.0: the nuts and bolts. Methods Mol Biol 278, 379–402, Jan (2004).
  6. Linge, J. P., Habeck, M., Rieping, W., and Nilges, M. ARIA: automated NOE assignment and NMR structure calculation. Bioinformatics 19(2), 315–6, Jan (2003).
  7. Linge, J. P., Williams, M. A., Spronk, C. A. E. M., Bonvin, A. M. J. J., and Nilges, M. Refinement of protein structures in explicit solvent. Proteins 50(3), 496–506, Feb (2003).
  8. Linge, J. P., O’Donoghue, S. I., and Nilges, M. Automated assignment of ambiguous nuclear overhauser effects with ARIA. Meth Enzymol 339, 71–90, Jan (2001).
  9. Linge, J. P. and Nilges, M. Influence of non-bonded parameters on the quality of NMR structures: a new force field for NMR structure calculation. J Biomol NMR 13(1), 51–9, Jan (1999).
  10. Nilges, M. and O’Donoghue, S. I. Ambiguous NOEs and automated NOE assignment. Prog Nucl Mag Res Sp 32, 107–139, Jan (1998).
  11. Nilges, M. Ambiguous distance data in the calculation of NMR structures. Folding & design 2(4), S53–7, Jan (1997).
  12. Nilges, M., Macias, M. J., O’Donoghue, S. I., and Oschkinat, H. Automated NOESY interpretation with ambiguous distance restraints: the refined NMR solution structure of the pleckstrin homology domain from beta-spectrin. J Mol Biol 269(3), 408–22, Jun (1997).
  13. Folmer, R. H., Hilbers, C. W., Konings, R. N., and Nilges, M. Floating stereospecific assignment revisited: application to an 18 kDa protein and comparison with J-coupling data. J Biomol NMR 9(3), 245–58, Apr (1997).
  14. Nilges, M. Structure calculation from NMR data. Curr Opin Struct Biol 6(5), 617–23, Oct (1996).
  15. Nilges, M. Calculation of protein structures with ambiguous distance restraints. Automated assignment of ambiguous NOE crosspeaks and disulphide connectivities. J Mol Biol 245(5), 645–60, Feb (1995).
  16. Nilges, M. A calculation strategy for the structure determination of symmetric dimers by 1H NMR. Proteins 17(3), 297–309, Nov (1993).
  17. Nilges, M., Clore, G. M., and Gronenborn, A. M. Determination of three-dimensional structures of proteins from interproton distance data by dynamical simulated annealing from a random array of atoms. Circumventing problems associated with folding. FEBS Lett 239(1), 129–36, Oct (1988).
  18. Nilges, M., Clore, G. M., and Gronenborn, A. M. Determination of three-dimensional structures of proteins from interproton distance data by hybrid distance geometry-dynamical simulated annealing calculations. FEBS Lett 229(2), 317–24, Mar (1988).
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