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HADDOCK
The HADOOCK (High Ambiguity Driven protein-protein DOCKing) is developed at the Bijvoet Center for Biomolecular Research, and one starting point for this software was the philosophy of the ARIA protocol. This approach is described in the following reference:
C. Dominguez, R. Boelens and A. M.J.J. Bonvin (2003)
HADDOCK: a protein-protein docking approach based on biochemical and/or biophysical information.
J. Am. Chem. Soc. 125, 1731-1737. Pubmed
HADDOCK is an approach that makes use of biochemical and/or biophysical interaction data such as chemical shift perturbation data resulting from NMR titration experiments or mutagenesis data. This information is introduced as Ambiguous Interaction Restraints (AIRs) to drive the docking process.
ARIA is part of the ELIXIR infrastructure.