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Structure vizualisation

vmd-xplor

The vmd-xplor package is a combination of the X-PLOR structure determination program and VMD (Visual Molecular Dynamics) - a freely available molecular visualization program. This package allows manual manipulation of the protein structures to satisfy experimental NMR data, and can also be used to visualize the goodness of fit of a particular model to given restraints. The reference for vmd-xplor is:

Charles D. Schwieters and G. Marius Clore. The VMD-XPLOR Visualization Package for NMR Structure Refinement (2001) J Magn Res 149, 239-244. Pubmed


PyMOL

PyMOL is a molecular graphics system with an embedded Python interpreter designed for real-time visualization and rapid generation of high-quality molecular graphics images and animations. It can also perform many other valuable tasks such as editing PDB files or display NMR restraints.

MOLMOL

MOLMOL (MOLecule analysis and MOLecule display) is a molecular graphics program for displaying, analyzing, and manipulating the three-dimensional structure of biological macromolecules, with special emphasis on the study of protein or DNA structures determined by NMR. The reference for MOLMOL is:


R Koradi, M Billeter and K W├╝thrich. MOLMOL: a program for display and analysis of macromolecular structures (1996) J Mol Graphics 14, 51-55. Pubmed


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