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Structure vizualisation
The vmd-xplor package is a combination of the X-PLOR structure
determination program and
VMD (Visual Molecular Dynamics)
- a freely
available molecular visualization program. This
package allows manual manipulation of the protein structures to
satisfy experimental NMR data, and can also be used to visualize the
goodness of fit of a particular model to given restraints. The reference for vmd-xplor is:
Charles D. Schwieters and G. Marius Clore. The VMD-XPLOR Visualization Package for NMR Structure Refinement (2001) J Magn Res 149, 239-244. Pubmed
PyMOL is a molecular graphics system with an embedded Python
interpreter designed for real-time visualization and rapid generation
of high-quality molecular graphics images and animations. It can also
perform many other valuable tasks such as editing PDB files or display NMR restraints.
MOLMOL (MOLecule analysis and MOLecule display) is a molecular graphics program for displaying, analyzing, and
manipulating the three-dimensional structure of biological macromolecules,
with special emphasis on the study of protein or DNA structures determined
by NMR. The reference for MOLMOL is:
R Koradi, M Billeter and K Wüthrich. MOLMOL: a program for display and analysis of macromolecular structures (1996)
J Mol Graphics 14, 51-55. Pubmed
ARIA is part of the ELIXIR infrastructure.